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R.version

platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status  
major 2
minor 13.1
year 2011
month 07
day 08
svn rev 56322
language R
version.string R version 2.13.1 (2011-07-08)


search()

.GlobalEnv
package:brew
package:stats
package:graphics
package:grDevices
package:utils
package:datasets
package:methods
Autoloads
rapache
package:base


.libPaths()

/usr/local/lib/R/site-library
/usr/lib/R/site-library
/usr/lib/R/library


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digits 7
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HTTPUserAgent R (2.13.1 i486-pc-linux-gnu i486 linux-gnu)
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PWD /home/hornerj/rapache
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Sys.info()

sysname Linux
release 2.6.32-32-generic
version #62-Ubuntu SMP Wed Apr 20 21:54:21 UTC 2011
nodename biostat128
machine i686
login hornerj
user hornerj


.Machine

double.eps 2.22044604925031e-16
double.neg.eps 1.11022302462516e-16
double.xmin 2.2250738585072e-308
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.Platform

OS.type unix
file.sep /
dynlib.ext .so
GUI unknown
endian little
pkgType source
path.sep :
r_arch  


Cstack_info()

size NA
current NA
direction 1
eval_depth 10


Attached Packages

brew

Package brew
Type Package
Title Templating Framework for Report Generation
Version 1.0-3
Date 2007-08-21
Author Jeffrey Horner
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License GPL-2
Packaged Mon Oct 20 10:54:33 2008; hornerj
Built R 2.10.0; ; 2010-02-06 19:40:57 UTC; unix


stats

Package stats
Version 2.13.1
Priority base
Title The R Stats Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R statistical functions
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:35:57 UTC; unix


graphics

Package graphics
Version 2.13.1
Priority base
Title The R Graphics Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R functions for base graphics
Imports grDevices
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:35:56 UTC; unix


grDevices

Package grDevices
Version 2.13.1
Priority base
Title The R Graphics Devices and Support for Colours and Fonts
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Graphics devices and support for base and grid graphics
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:35:54 UTC; unix


utils

Package utils
Version 2.13.1
Priority base
Title The R Utils Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R utility functions
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:35:54 UTC; unix


datasets

Package datasets
Version 2.13.1
Priority base
Title The R Datasets Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R datasets
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:35:58 UTC; unix


methods

Package methods
Version 2.13.1
Priority base
Imports utils
Title Formal Methods and Classes
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Formally defined methods and classes for R objects, plus other programming tools, as described in the reference
References John M. Chambers (2008) ``Software for Data Analysis: Programming with R''; Springer NY.
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:36:03 UTC; unix


base

Package base
Version 2.13.1
Priority base
Title The R Base Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R functions
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:36:06 UTC; unix


Installed Packages

bit

Package bit
Type Package
Title A class for vectors of 1-bit booleans
Version 1.1-2
Date 2009-07-07
Author Jens Oehlschl\xE4gel <Jens.Oehlschlaegel_at_truecluster.com>
Maintainer Jens Oehlschl\xE4gel <Jens.Oehlschlaegel_at_truecluster.com>
Depends R (>= 2.9.2)
Description bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts; fast boolean operators and fast summary statistics. With 'bit' vectors you can store true binary booleans {FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this means factor 32 less RAM and factor 32 more speed on boolean operations. With this speed gain it even pays-off to convert to bit in order to avoid a single boolean operation on logicals or a single set operation on (longer) integer subscripts, the pay-off is dramatic when such components are used more than once. Reading from and writing to bit is approximately as fast as accessing standard logicals - mostly due to R's time for memory allocation. The package allows to work with pre-allocated memory for return values by calling .Call() directly: when evaluating the speed of C-access with pre-allocated vector memory, coping from bit to logical requires only 70% of the time for copying from logical to logical; and copying from logical to bit comes at a performance penalty of 150%. the package now contains further classes for representing logical selections: 'bitwhich' for very skewed selections and 'ri' for selecting ranges of values for chunked processing. All three index classes can be used for subsetting 'ff' objects (ff-2.1-0 and higher).
License GPL-2
LazyLoad yes
URL http://ff.r-forge.r-project.org/
Encoding latin1
Repository CRAN
Repository/R-Forge/Project ff
Repository/R-Forge/Revision 16
Date/Publication 2009-10-26 19:26:39
Packaged 2009-10-25 21:08:26 UTC; rforge
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:29:23 UTC; unix


bitops

Package bitops
Version 1.0-4.1
Date 2009-02-13
Author S original by Steve Dutky <sdutky_at_terpalum.umd.edu> initial R port and extensions by Martin Maechler. revised and modified by Steve Dutky
Maintainer Steve Dutky <sdutky_at_terpalum.umd.edu>
Title Functions for Bitwise operations
Description Functions for Bitwise operations on integer vectors.
License GPL version 2 or later
Packaged Fri Feb 13 14:40:06 2009; ripley
Built R 2.12.1; i486-pc-linux-gnu; 2011-01-31 16:15:17 UTC; unix


brew

Package brew
Type Package
Title Templating Framework for Report Generation
Version 1.0-3
Date 2007-08-21
Author Jeffrey Horner
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License GPL-2
Packaged Mon Oct 20 10:54:33 2008; hornerj
Built R 2.10.0; ; 2010-02-06 19:40:57 UTC; unix


colorspace

Package colorspace
Version 1.0-1
Date 2009-04-24
Title Color Space Manipulation
Author Ross Ihaka, Paul Murrell, Kurt Hornik, Achim Zeileis
Maintainer Ross Ihaka <ihaka_at_stat.auckland.ac.nz>
Description Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided.
Depends R (>= 2.0.0), methods
Suggests KernSmooth, MASS, kernlab, mvtnorm, vcd
License BSD
LazyLoad yes
Packaged Fri Apr 24 18:21:34 2009; zeileis
Repository CRAN
Date/Publication 2009-04-24 16:23:06
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:34:42 UTC; unix


datamap

Package datamap
Type Package
Title A system for mapping foreign objects to R variables and environments
Version 0.1-1
Date 2009-12-03
Author Jeffrey Horner <jeffrey.horner_at_gmail.com>
Maintainer Jeffrey Horner <jeffrey.horner_at_gmail.com>
Description datamap utilizes variable bindings and objects of class "UserDefinedDatabase" to provide a simple mapping system to foreign objects. Maps can be used as environments or attached to the search path, and changes to either are persistent. Mapped foreign objects are fetched in real-time and are never cached by the mapping system.
Depends DBI
License GPL-2
LazyLoad yes
Packaged 2009-12-03 15:37:49 UTC; hornerj
Repository CRAN
Date/Publication 2009-12-03 17:38:05
Built R 2.10.0; i486-pc-linux-gnu; 2010-02-05 20:09:55 UTC; unix


DBI

Package DBI
Version 0.2-5
Title R Database Interface
Author R Special Interest Group on Databases (R-SIG-DB)
Maintainer David A. James <daj025_at_gmail.com>
Depends R (>= 2.3.0), methods
Imports methods
Description A database interface (DBI) definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.
LazyLoad yes
License LGPL (>= 2)
Collate DBI.R Util.R zzz.R
Packaged 2009-12-21 19:58:17 UTC; sfalcon
Repository CRAN
Date/Publication 2009-12-22 07:54:43
Built R 2.10.0; ; 2010-01-07 15:29:25 UTC; unix


digest

Package digest
Version 0.4.2
Date $Date: 2009-12-03 16:42:47 +0100 (Thu, 03 Dec 2009) $
Author Dirk Eddelbuettel <edd_at_debian.org> with contributions by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson and Simon Urbanek
Maintainer Dirk Eddelbuettel <edd_at_debian.org>
Title Create cryptographic hash digests of R objects
Description The digest package provides functions for the creation of `hash' digests of arbitrary R objects using the md5, sha-1, sha-256 and crc32 algorithms permitting easy comparison of R language objects. The md5 algorithm by Ron Rivest is specified in RFC 1321, the SHA-1 and SHA-256 algorithms are specified in FIPS-180-1 and FIPS-180-2, and the crc32 algorithm is described in ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt. For md5, sha-1 and sha-256, this packages uses small standalone implementations that were provided by Christophe Devine. For crc32, code from the zlib library is used. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as OpenSSL should be used.
Depends R (>= 2.4.1)
License GPL-2
URL http://dirk.eddelbuettel.com/code/digest.html
Repository CRAN
Repository/R-Forge/Project digest
Repository/R-Forge/Revision 28
Date/Publication 2009-12-06 09:22:26
Packaged 2009-12-03 21:07:51 UTC; rforge
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:29:26 UTC; unix


ff

Package ff
Version 2.1-1
Date 2008-08-03
Title memory-efficient storage of large data on disk and fast access functions
Author Daniel Adler <dadler_at_uni-goettingen.de>, Christian Gl\xE4ser <christian_glaeser_at_gmx.de>, Oleg Nenadic <onenadi_at_uni-goettingen.de>, Jens Oehlschl\xE4gel <Jens.Oehlschlaegel_at_truecluster.com>, Walter Zucchini <wzucchi_at_uni-goettingen.de>
Maintainer Jens Oehlschl\xE4gel <Jens.Oehlschlaegel_at_truecluster.com>
Depends R (>= 2.9.2), utils, bit (>= 1.1-1)
Suggests biglm
Description The ff package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently mapping only a section (pagesize) in main memory - the effective virtual memory consumption per ff object. ff supports R's standard atomic data types 'double', 'logical', 'raw' and 'integer' and non-standard atomic types boolean (1 bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned), single (4 byte float with NAs). For example 'quad' allows efficient storage of genomic data as an 'A','T','G','C' factor. The unsigned types support 'circular' arithmetic. There is also support for close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and custom close-to-atomic types. ff not only has native C-support for vectors, matrices and arrays with flexible dimorder (major column-order, major row-order and generalizations for arrays). There is also a ffdf class not unlike data.frames and import/export filters for csv files. ff objects store raw data in binary flat files in native encoding, and complement this with metadata stored in R as physical and virtual attributes. ff objects have well-defined hybrid copying semantics, which gives rise to certain performance improvements through virtualization. ff objects can be stored and reopened across R sessions. ff files can be shared by multiple ff R objects (using different data en/de-coding schemes) in the same process or from multiple R processes to exploit parallelism. A wide choice of finalizer options allows to work with 'permanent' files as well as creating/removing 'temporary' ff files completely transparent to the user. On certain OS/Filesystem combinations, creating the ff files works without notable delay thanks to using sparse file allocation. Several access optimization techniques such as Hybrid Index Preprocessing and Virtualization are implemented to achieve good performance even with large datasets, for example virtual matrix transpose without touching a single byte on disk. Further, to reduce disk I/O, 'logicals' and non-standard data types get stored native and compact on binary flat files i.e. logicals take up exactly 2 bits to represent TRUE, FALSE and NA. Beyond basic access functions, the ff package also provides compatibility functions that facilitate writing code for ff and ram objects and support for batch processing on ff objects (e.g. as.ram, as.ff, ffapply). ff interfaces closely with functionality from package 'bit': chunked looping, fast bit operations and coercions between different objects that can store subscript information ('bit', 'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows to work interactively with selections of large datasets and quickly modify selection criteria. Further high-performance enhancements can be made available upon request.
License file LICENSE
LazyLoad yes
URL http://ff.r-forge.r-project.org/
Encoding latin1
Repository CRAN
Repository/R-Forge/Project ff
Repository/R-Forge/Revision 23
Date/Publication 2009-11-05 12:34:44
Packaged 2009-11-04 21:10:44 UTC; rforge
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:29:34 UTC; unix


ggplot

Package ggplot
Type Package
Title An implementation of the Grammar of Graphics in R
Version 0.4.2
Date 2007-05-05
Author Hadley Wickham <h.wickham_at_gmail.com>
Maintainer Hadley Wickham <h.wickham_at_gmail.com>
Description An implementation of the grammar of graphics in R. It combines the advantages of both base and lattice graphics: conditioning and shared axes are handled automatically, and you can still build up a plot step by step from multiple data sources. It also implements a more sophisticated multidimensional conditioning system and a consistent interface to map data to aesthetic attributes. See \url{http://had.co.nz/ggplot/} for more information, documentation and examples.
Suggests butler, mapproj, quantreg, MASS
Depends R (>= 2.3), grid, reshape (>= 0.7.4), RColorBrewer
LazyData yes
License GPL
Packaged Mon Jul 9 16:31:11 2007; hadley
Built R 2.7.0; ; 2008-06-04 15:13:04; unix


ggplot2

Package ggplot2
Type Package
Title An implementation of the Grammar of Graphics
Version 0.8.9
Author Hadley Wickham <h.wickham_at_gmail.com>
Maintainer Hadley Wickham <h.wickham_at_gmail.com>
Description An implementation of the grammar of graphics in R. It combines the advantages of both base and lattice graphics: conditioning and shared axes are handled automatically, and you can still build up a plot step by step from multiple data sources. It also implements a sophisticated multidimensional conditioning system and a consistent interface to map data to aesthetic attributes. See the ggplot2 website for more information, documentation and examples.
Depends reshape (>= 0.8.0), grid, proto
Imports plyr (>= 1.0), splines, MASS, RColorBrewer, digest, colorspace
Suggests quantreg, Hmisc, mapproj, maps, hexbin, gpclib, maptools
Extends sp
License GPL-2
URL http://had.co.nz/ggplot2/
LazyLoad false
LazyData true
Collate aaa-.r aaa-compare.r aaa-constants.r aaa-examples.r aaa-html.r aaa-rdoc.r aes.r annotation.r coord-.r coord-cartesian-.r coord-cartesian-equal.r coord-cartesian-flipped.r coord-map.r coord-polar.r coord-transform.r date-time-breaks.r date-time.r facet-.r facet-grid-.r facet-labels.r facet-viewports.r facet-wrap.r formats.r fortify-lm.r fortify-map.r fortify-spatial.r fortify.r geom-.r geom-abline.r geom-bar-.r geom-bar-histogram.r geom-bin2d.r geom-blank.r geom-boxplot.r geom-crossbar.r geom-defaults.r geom-error.r geom-errorh.r geom-freqpoly.r geom-hex.r geom-hline.r geom-linerange.r geom-path-.r geom-path-contour.r geom-path-density2d.r geom-path-line.r geom-path-step.r geom-point-.r geom-point-jitter.r geom-pointrange.r geom-polygon.r geom-quantile.r geom-rect.r geom-ribbon-.r geom-ribbon-density.r geom-rug.r geom-segment.r geom-smooth.r geom-text.r geom-tile.r geom-vline.r grob-absolute.r grob-background.r grob-grid.r grob-null.r guides-axis.r guides-grid.r guides-legend.r labels.r layer.r matrix.r plot-build.r plot-construction.r plot-last.r plot-render.r plot-surrounds.r plot.r position-.r position-collide.r position-dodge.r position-fill.r position-identity.r position-jitter.r position-stack.r quick-plot.r save.r scale-.r scale-continuous-.r scale-continuous-alpha.r scale-continuous-colour.r scale-convenience.r scale-date.r scale-datetime.r scale-defaults.r scale-discrete-.r scale-discrete-colour.r scale-discrete-grey.r scale-discrete-position.r scale-identity.r scale-linetype.r scale-manual.r scale-shape.r scale-size.r scales-.r stat-.r stat-bin.r stat-bin2d.r stat-binhex.r stat-boxplot.r stat-contour.r stat-density-2d.r stat-density.r stat-function.r stat-identity.r stat-qq.r stat-quantile.r stat-smooth-methods.r stat-smooth.r stat-spoke.r stat-sum.r stat-summary.r stat-unique.r stat-vline.r summary.r templates.r theme-defaults.r theme-elements.r theme.r trans-.r trans-scales.r utilities-break.r utilities-colour.r utilities-discrete.r utilities-facet.r utilities-grid.r utilities-layer.r utilities-matrix.r utilities-position.r utilities-resolution.r utilities.r xxx-codegen.r xxx-digest.r xxx.r zxx.r coord-munch.r
Packaged 2010-12-23 16:33:29 UTC; hadley
Repository CRAN
Date/Publication 2010-12-23 18:17:13
Built R 2.12.1; ; 2011-01-31 16:15:53 UTC; unix


hexView

Package hexView
Version 0.3-1
Title Viewing Binary Files
Author Paul Murrell <paul_at_stat.auckland.ac.nz>
Maintainer Paul Murrell <paul_at_stat.auckland.ac.nz>
Depends R (>= 1.8.0)
Description Functions to view files in raw binary form like in a hex editor. Additional functions to specify and read arbitrary binary formats.
License GPL version 2
Packaged Fri Aug 22 16:00:41 2008; paul
Built R 2.10.0; ; 2010-01-07 15:34:45 UTC; unix


Hmisc

Package Hmisc
Version 3.8-3
Date 2010-06-22
Title Harrell Miscellaneous
Author Frank E Harrell Jr <f.harrell_at_vanderbilt.edu>, with contributions from many other users.
Maintainer Charles Dupont <charles.dupont_at_vanderbilt.edu>
Depends R (>= 2.4.0), methods, survival
Imports lattice, cluster, survival
Suggests lattice, grid, nnet, foreign, chron, acepack, TeachingDemos, Design, cluster, mice, subselect
Description The Hmisc library contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of S objects to LaTeX code, and recoding variables. Please submit bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
License GPL (>= 2)
LazyLoad Yes
URL http://biostat.mc.vanderbilt.edu/wiki/Main/Hmisc, http://biostat.mc.vanderbilt.edu/trac/Hmisc
Packaged 2010-09-07 16:14:27 UTC; dupontct
Repository CRAN
Date/Publication 2010-09-08 06:44:29
Built R 2.13.0; i486-pc-linux-gnu; 2011-07-12 21:26:52 UTC; unix


iterators

Package iterators
Type Package
Title Iterator construct for R
Version 1.0.3
Author REvolution Computing
Maintainer REvolution Computing <packages_at_REvolution-computing.com>
Description Support for iterators, which allow a programmer to traverse through all the elements of a vector, list, or other collection of data.
Depends R (>= 2.5.0), utils
Suggests foreach
License Apache License (== 2.0)
Packaged 2009-10-05 20:31:21 UTC; weston
Repository CRAN
Date/Publication 2009-10-06 06:56:52
Built R 2.12.1; ; 2011-01-31 16:15:18 UTC; unix


itertools

Package itertools
Type Package
Title Iterator Tools
Version 0.1-1
Author Steve Weston, Hadley Wickham
Maintainer Steve Weston <stephen.b.weston_at_gmail.com>
Description Various tools for creating iterators, many patterned after functions in the Python itertools module, and others patterned after functions in the 'snow' package.
Depends R (>= 2.5.0), iterators(>= 1.0.0)
Suggests foreach
Enhances foreach, iterators
License GPL-2
Repository CRAN
Repository/R-Forge/Project itertools
Repository/R-Forge/Revision 38
Date/Publication 2010-01-14 15:37:23
Packaged 2010-01-13 21:12:15 UTC; rforge
Built R 2.12.1; ; 2011-01-31 16:15:22 UTC; unix


plyr

Package plyr
Type Package
Title Tools for splitting, applying and combining data
Version 1.4
Author Hadley Wickham <h.wickham_at_gmail.com>
Maintainer Hadley Wickham <h.wickham_at_gmail.com>
Description plyr is a set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each pieces and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of plyr has been generously supported by BD (Becton Dickinson).
URL http://had.co.nz/plyr
Depends R (>= 2.11.0)
Suggests abind, testthat (>= 0.2), tcltk, foreach
Imports itertools, iterators
License MIT
LazyData true
Collate 'dimensions.r' 'helper-arrange.r' 'helper-col-wise.r' 'helper-count.r' 'helper-data-frame.r' 'helper-defaults.r' 'helper-each.r' 'helper-mutate.r' 'helper-quick-df.r' 'helper-round-any.r' 'helper-splat.r' 'helper-summarise.r' 'helper-try.r' 'helper-vaggregate.r' 'id.r' 'immutable.r' 'indexed-array.r' 'indexed-data-frame.r' 'indexed.r' 'join.r' 'loop-apply.r' 'ply-array.r' 'ply-data-frame.r' 'ply-iterator.r' 'ply-list.r' 'ply-mapply.r' 'ply-null.r' 'ply-replicate.r' 'progress.r' 'quote.r' 'rbind-matrix.r' 'rbind.r' 'simplify-array.r' 'simplify-data-frame.r' 'simplify-vector.r' 'split-array.r' 'split-data-frame.r' 'split-indices.r' 'split.r' 'utils.r'
Packaged 2011-01-04 01:26:50 UTC; hadley
Repository CRAN
Date/Publication 2011-01-04 07:28:49
Built R 2.12.1; i486-pc-linux-gnu; 2011-01-31 16:15:45 UTC; unix


profr

Package profr
Type Package
Title An alternative display for profiling information
Version 0.1.1
Date 2008-05-02
Author Hadley Wickham <h.wickham_at_gmail.com>
Maintainer Hadley Wickham <h.wickham_at_gmail.com>
Description profr provides an alternative data structure and visual rendering for the profiling information generated by Rprof.
URL http://had.co.nz/profr
Depends R (>= 2.6.2), digest
Suggests ggplot2
License MIT
LazyData true
Packaged Fri May 2 22:47:14 2008; hornik
Built R 2.10.0; ; 2010-01-07 15:35:00 UTC; unix


proto

Package proto
Version 0.3-8
Date 2007-01-15
Title Prototype object-based programming
Author Louis Kates, Thomas Petzoldt
Maintainer Gabor Grothendieck <ggrothendieck_at_gmail.com>
Description An object oriented system using object-based, also called prototype-based, rather than class-based object oriented ideas.
Depends R (>= 2.3.1)
Suggests graph, Rgraphviz
License GPL2
URL http://code.google.com/p/r-proto/
Packaged Sat Sep 15 12:04:27 2007; Louis
Built R 2.10.0; ; 2010-01-07 15:35:01 UTC; unix


RColorBrewer

Package RColorBrewer
Version 1.0-2
Date 2007-10-21
Title ColorBrewer palettes
Author Erich Neuwirth <erich.neuwirth_at_univie.ac.at>
Maintainer Erich Neuwirth <erich.neuwirth_at_univie.ac.at>
Depends R (>= 2.0.0)
Description The packages provides palettes for drawing nice maps shaded according to a variable.
License Apache License 2.0
Packaged Mon Oct 22 20:34:27 2007; hornik
Built R 2.10.0; ; 2010-01-07 15:35:01 UTC; unix


RCurl

Package RCurl
Version 1.5-0
Title General network (HTTP/FTP/...) client interface for R
Author Duncan Temple Lang
SystemRequirements curl (version 7.14.0 or higher) http://curl.haxx.se
Maintainer Duncan Temple Lang <duncan_at_wald.ucdavis.edu>
Description The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
License BSD
Depends R (>= 2.7.0), methods, bitops
Suggests Rcompression
URL http://www.omegahat.org/RCurl
Limitations One doesn't yet have full control over the contents of a POST form such as specifying files, content type. Error handling uses a single global variable at present.
Note This will be used generally to communicate with HTTP servers and specifically in the SOAP package, HTML forms and for accessing data on Web sites that require more state information than simply URL access (e.g. cookies).
Check To run R CMD check, one really needs network access. It is an HTTP client! This can be problematic as a Web site may be down when you run but the real tests are important.
Packaged 2010-11-21 13:54:25 UTC; duncan
Repository CRAN
Date/Publication 2010-11-22 08:21:53
Built R 2.12.1; i486-pc-linux-gnu; 2011-01-31 16:15:33 UTC; unix


reshape

Package reshape
Type Package
Title Flexibly reshape data.
Version 0.8.3
Date 2008-11-04
Author Hadley Wickham <h.wickham_at_gmail.com>
Maintainer Hadley Wickham <h.wickham_at_gmail.com>
Description Reshape lets you flexibly restructure and aggregate data using just two functions: melt and cast.
URL http://had.co.nz/reshape
Depends R (>= 2.6.1), plyr
License MIT
LazyData true
Packaged 2009-04-28 03:28:31 UTC; hadley
Repository CRAN
Date/Publication 2009-04-28 07:56:42
Built R 2.10.0; ; 2010-01-07 15:35:16 UTC; unix


RJSONIO

Package RJSONIO
Version 0.2-4
Title Serialize R objects to JSON, JavaScript Object Notation
Description This is a package that allows conversion to and from data in Javascript object notation (JSON) format. This allows R objects to be inserted into Javascript/ECMAScript/ActionScript code and allows R programmers to read and convert JSON content to R objects. This is an alternative to rjson package. That version is too slow for large data and not extensible, but a very useful prototype. This package uses methods, vectorized operations and C code and callbacks to R functions for deserializing JSON objects to R. In the future, we will implement the deserialization in C. There are some routines that can be used now for particular array types.
Note See http://www.json.org/JSON_checker/test.zip for tests.
License BSD
Depends methods
Author Duncan Temple Lang
Maintainer Duncan Temple Lang <duncan_at_r-project.org>
Packaged 2009-11-28 00:33:16 UTC; duncan
Built R 2.10.0; i486-pc-linux-gnu; 2010-02-05 20:10:36 UTC; unix


Rook

Package Rook
Type Package
Title Rook - a web server interface for R
Version 1.0-2
Date 2011-04-14
Author Jeffrey Horner <jeffrey.horner_at_gmail.com>
Maintainer Jeffrey Horner <jeffrey.horner_at_gmail.com>
Description This package contains the Rook specification and convenience software for building and running Rook applications. To get started, be sure and read the 'Rook' help file first.
Depends R (>= 2.13.0), utils, tools, methods, brew
License GPL-2
LazyLoad yes
Packaged 2011-04-24 22:43:15 UTC; hornerj
Repository CRAN
Date/Publication 2011-04-25 06:10:33
Built R 2.13.0; i486-pc-linux-gnu; 2011-06-27 15:13:50 UTC; unix


RSQLite

Package RSQLite
Version 0.8-0
Title SQLite interface for R
Author David A. James
Maintainer Seth Falcon <seth_at_userprimary.net>
Description Database Interface R driver for SQLite. This package embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.6.21) is included.
LazyLoad yes
Depends R (>= 2.6.0), methods, DBI (>= 0.2-3)
Imports methods, DBI (>= 0.2-3)
Suggests RUnit (>= 0.4.22)
License LGPL (>= 2)
Collate zzz.R S4R.R dbObjectId.R SQLite.R SQLiteSupport.R
Packaged 2009-12-21 19:58:22 UTC; sfalcon
Repository CRAN
Date/Publication 2009-12-22 07:54:51
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:30:11 UTC; unix


slam

Package slam
Version 0.1-18
Date 2010-10-18
Title Sparse Lightweight Arrays and Matrices
Description Data structures and algorithms for sparse arrays and matrices, based on index arrays and simple triplet representations, respectively.
Author Kurt Hornik, David Meyer, Christian Buchta
Maintainer David Meyer <David.Meyer_at_R-project.org>
Depends R (>= 2.8.0)
License GPL-2
Packaged 2010-10-18 08:32:42 UTC; hornik
Repository CRAN
Date/Publication 2010-10-18 08:51:49
Built R 2.12.1; i486-pc-linux-gnu; 2011-01-31 16:15:20 UTC; unix


StatDataML

Package StatDataML
Version 1.0-19
Date 2009-11-16
Title implementation of the StatDataML proposal
Author David Meyer <David.Meyer_at_R-Project.org>, Torsten Hothorn <torsten_at_hothorn.de>, Friedrich Leisch <Friedrich.Leisch_at_R-Project.org>
Description read and write StatDataML files
Maintainer David Meyer <David.Meyer_at_R-project.org>
Depends R (>= 2.0.0), XML, utils
License GPL-2
Packaged 2009-11-16 00:18:17 UTC; meyer
Repository CRAN
Date/Publication 2009-12-02 22:08:34
Built R 2.10.0; ; 2010-01-07 15:29:29 UTC; unix


tm

Package tm
Title Text Mining Package
Version 0.5-4.1
Date 2010-09-27
Author Ingo Feinerer
Maintainer Ingo Feinerer <feinerer_at_logic.at>
Depends R (>= 2.11.0), methods
Imports slam (>= 0.1-10)
Suggests filehash, proxy, Rgraphviz, Rmpi, RWeka, snow, Snowball, XML
SystemRequirements antiword for reading MS Word files, pdfinfo and pdftotext for reading PDF
Description A framework for text mining applications within R.
License GPL (>= 2)
URL http://tm.r-forge.r-project.org/
Packaged 2010-09-27 13:01:44 UTC; hornik
Repository CRAN
Date/Publication 2010-09-27 13:52:57
Built R 2.12.1; i486-pc-linux-gnu; 2011-01-31 16:15:40 UTC; unix


twitteR

Package twitteR
Title R based Twitter client
Description Provides an interface to the Twitter web API
Version 0.9.2
Author Jeff Gentry <geoffjentry_at_gmail.com>
Maintainer Jeff Gentry <geoffjentry_at_gmail.com>
Depends RCurl, RJSONIO, methods
License LGPL
Packaged 2010-12-08 02:51:29 UTC; gentrj
Repository CRAN
Date/Publication 2010-12-08 09:28:59
Built R 2.12.1; ; 2011-01-31 16:15:49 UTC; unix


TwoStageInf

Package TwoStageInf
Version 1.0
Title Proper Inference from Simon's Two-Stage Designs
Author Tatsuki Koyama <tatsuki.koyama_at_vanderbilt.edu>
Maintainer Will Gray <w.gray_at_vanderbilt.edu>
Depends R (>= 2.0.0)
Description  
License GPL version 3 or newer.
URL http://biostat.mc.vanderbilt.edu/TwoStageInference
Packaged Tue Nov 27 15:02:09 2007; graywh
Built R 2.6.2; ; 2008-04-02 10:00:42; unix


XML

Package XML
Version 2.6-0
Date 2009/08/03
Author Duncan Temple Lang (duncan_at_wald.ucdavis.edu)
Maintainer Duncan Temple Lang <duncan_at_wald.ucdavis.edu>
Title Tools for parsing and generating XML within R and S-Plus.
Depends R (>= 1.2.0), methods, utils
Suggests bitops
Imports methods
SystemRequirements libxml2 (>= 2.6.3)
LazyLoad yes
Description This package provides many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. It also offers access to an XPath "interpreter".
Note The versions numbers 1.0 and 2.0 do not have any special significance, but are merely the result of incrementing the minor count by 1 for each release. Specifically, there is no change in the interface.
URL http://www.omegahat.org/RSXML
License BSD
Collate AAA.R DTD.R DTDClasses.R DTDRef.R SAXMethods.S XMLClasses.R applyDOM.R assignChild.R catalog.R createNode.R dynSupports.R error.R flatTree.R hashTree.R htmlParse.R nodeAccessors.R parseDTD.R schema.S summary.R tangle.R toString.S tree.R version.R xmlErrorEnums.R xmlEventHandler.R xmlEventParse.R xmlHandler.R xmlInternalSource.R xmlOutputDOM.R xmlNodes.R xmlOutputBuffer.R xmlTree.R xmlTreeParse.R zzz.R supports.R parser.R libxmlFeatures.R xmlString.R saveXML.R namespaces.R readHTMLTable.R reflection.R xmlToDataFrame.R bitList.R
Repository CRAN
Date/Publication 2009-08-04 17:09:35
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:35:05 UTC; unix


xtable

Package xtable
Version 1.5-6
Date 2009/10/30
Title Export tables to LaTeX or HTML
Author David B. Dahl <dahl_at_stat.tamu.edu>
Maintainer David B. Dahl <dahl_at_stat.tamu.edu>
Description Coerce data to LaTeX and HTML tables
Depends R (>= 2.6.0)
License GPL (>= 2)
Packaged 2009-11-06 22:52:33 UTC; dahl
Repository CRAN
Date/Publication 2009-11-08 17:53:42
Built R 2.10.0; ; 2010-01-07 15:29:30 UTC; unix


digest

Package digest
Version 0.4.2
Date $Date: 2009-12-03 16:42:47 +0100 (Thu, 03 Dec 2009) $
Author Dirk Eddelbuettel <edd_at_debian.org> with contributions by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson and Simon Urbanek
Maintainer Dirk Eddelbuettel <edd_at_debian.org>
Title Create cryptographic hash digests of R objects
Description The digest package provides functions for the creation of `hash' digests of arbitrary R objects using the md5, sha-1, sha-256 and crc32 algorithms permitting easy comparison of R language objects. The md5 algorithm by Ron Rivest is specified in RFC 1321, the SHA-1 and SHA-256 algorithms are specified in FIPS-180-1 and FIPS-180-2, and the crc32 algorithm is described in ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt. For md5, sha-1 and sha-256, this packages uses small standalone implementations that were provided by Christophe Devine. For crc32, code from the zlib library is used. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as OpenSSL should be used.
Depends R (>= 2.4.1)
License GPL-2
URL http://dirk.eddelbuettel.com/code/digest.html
Repository CRAN
Repository/R-Forge/Project digest
Repository/R-Forge/Revision 28
Date/Publication 2009-12-06 09:22:26
Packaged 2009-12-03 21:07:51 UTC; rforge
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-07 15:29:26 UTC; unix


PopCon

Package PopCon
Type Package
Title A popularity contest for R and its packages
Version 0.1
Date 2008-02-07
Author Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description A popularity contest for R and its packages
License GPL 2.0
Built R 2.6.1; i486-pc-linux-gnu; 2008-02-14 15:39:01; unix


RMySQL

Package RMySQL
Version 0.7-4
Date 2009-04-07
Title R interface to the MySQL database
Author David A. James and Saikat DebRoy
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description Database interface and MySQL driver for R. This version complies with the database interface definition as implemented in the package DBI 0.2-2.
LazyLoad true
Depends R (>= 2.8.0), methods, DBI (>= 0.2-2), utils
License GPL-2
URL http://biostat.mc.vanderbilt.edu/RMySQL
Collate S4R.R zzz.R MySQLSupport.R dbObjectId.R MySQL.R
Packaged Tue Apr 7 15:19:44 2009; hornerj
Repository CRAN
Date/Publication 2009-04-14 17:26:56
Built R 2.10.0; i486-pc-linux-gnu; 2010-01-09 18:40:57 UTC; unix


base

Package base
Version 2.13.1
Priority base
Title The R Base Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R functions
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:36:06 UTC; unix


boot

Package boot
Priority recommended
Version 1.3-2
Date 2011-06-06
Author S original <http://statwww.epfl.ch/davison/BMA/library.html> by Angelo Canty <cantya_at_mcmaster.ca>. R port by Brian Ripley <ripley_at_stats.ox.ac.uk>.
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Description functions and datasets for bootstrapping from the book "Bootstrap Methods and Their Applications" by A. C. Davison and D. V. Hinkley (1997, CUP).
Title Bootstrap Functions (originally by Angelo Canty for S)
Depends R (>= 2.10.0), graphics, stats
Suggests survival
Enhances multicore, snow
LazyLoad yes
LazyData yes
License Unlimited
Packaged 2011-06-07 08:52:34 UTC; ripley
Repository CRAN
Date/Publication 2011-06-09 14:34:30
Built R 2.13.0; ; 2011-06-11 13:14:40 UTC; unix


class

Package class
Priority recommended
Version 7.3-2
Date 2010-03-28
Depends R (>= 2.5.0), stats, utils
Imports MASS
Author Brian Ripley <ripley_at_stats.ox.ac.uk>.
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Description Various functions for classification.
Title Functions for Classification
License GPL-2 | GPL-3
URL http://www.stats.ox.ac.uk/pub/MASS4/
LazyLoad yes
Packaged 2010-03-28 16:15:49 UTC; ripley
Repository CRAN
Date/Publication 2010-04-02 17:18:06
Built R 2.12.0; i486-pc-linux-gnu; 2010-11-22 01:49:30 UTC; unix


cluster

Package cluster
Version 1.14.0
Date 2011-06-07
Priority recommended
Author Martin Maechler, based on S original by Peter Rousseeuw <rousse_at_uia.ua.ac.be>, Anja.Struyf_at_uia.ua.ac.be and Mia.Hubert_at_uia.ua.ac.be, and initial R port by Kurt.Hornik_at_R-project.org
Maintainer Martin Maechler <maechler_at_stat.math.ethz.ch>
Title Cluster Analysis Extended Rousseeuw et al.
Description Cluster Analysis, extended original from Peter Rousseeuw, Anja Struyf and Mia Hubert.
Depends R (>= 2.9.0), stats, graphics, utils
Enhances MASS
LazyLoad yes
LazyData yes
License GPL (>= 2)
Packaged 2011-06-07 12:39:54 UTC; maechler
Repository CRAN
Date/Publication 2011-06-08 07:03:35
Built R 2.13.0; i486-pc-linux-gnu; 2011-06-09 12:59:56 UTC; unix


codetools

Package codetools
Version 0.2-8
Priority recommended
Author Luke Tierney <luke_at_stat.uiowa.edu>
Description Code analysis tools for R
Title Code Analysis Tools for R
Depends R (>= 2.1)
Maintainer Luke Tierney <luke_at_stat.uiowa.edu>
License GPL
Packaged 2011-02-14 20:49:48 UTC; luke
Repository CRAN
Date/Publication 2011-02-15 09:52:32
Built R 2.12.1; ; 2011-02-16 23:59:32 UTC; unix


compiler

Package compiler
Version 2.13.1
Priority base
Title The R Compiler Package
Author Luke Tierney <luke-tierney_at_uiowa.edu>
Maintainer R Core Team <R-core_at_r-project.org>
Description Byte code compiler for R
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:36:05 UTC; unix


datasets

Package datasets
Version 2.13.1
Priority base
Title The R Datasets Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R datasets
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:35:58 UTC; unix


foreign

Package foreign
Priority recommended
Version 0.8-44
Date 2011-04-10
Title Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
Depends R (>= 2.13.0), stats
Imports methods, utils
Maintainer R-core <R-core_at_r-project.org>
Author R-core members, Saikat DebRoy <saikat_at_stat.wisc.edu>, Roger Bivand <Roger.Bivand_at_nhh.no> and others: see COPYRIGHTS file in the sources.
Description Functions for reading and writing data stored by statistical packages such as Minitab, S, SAS, SPSS, Stata, Systat, ..., and for reading and writing dBase files.
LazyLoad yes
License GPL (>= 2)
BugReports http://bugs.r-project.org
Packaged 2011-04-12 07:49:53 UTC; ripley
Repository CRAN
Date/Publication 2011-04-13 14:51:20
Built R 2.13.0; i486-pc-linux-gnu; 2011-04-14 11:59:33 UTC; unix


graphics

Package graphics
Version 2.13.1
Priority base
Title The R Graphics Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R functions for base graphics
Imports grDevices
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:35:56 UTC; unix


grDevices

Package grDevices
Version 2.13.1
Priority base
Title The R Graphics Devices and Support for Colours and Fonts
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Graphics devices and support for base and grid graphics
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:35:54 UTC; unix


grid

Package grid
Version 2.13.1
Priority base
Title The Grid Graphics Package
Author Paul Murrell <paul_at_stat.auckland.ac.nz>
Maintainer R Core Team <R-core_at_r-project.org>
Description A rewrite of the graphics layout capabilities, plus some support for interaction
Imports grDevices
Suggests lattice
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:36:03 UTC; unix


KernSmooth

Package KernSmooth
Priority recommended
Version 2.23-6
Date 2011-05-31
Title Functions for kernel smoothing for Wand & Jones (1995)
Author Matt Wand <Matt.Wand_at_uts.edu.au> R port by Brian Ripley <ripley_at_stats.ox.ac.uk>.
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Depends R (>= 2.5.0), stats
Suggests MASS
Description functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".
License Unlimited
Packaged 2011-06-08 06:08:00 UTC; ripley
Repository CRAN
Date/Publication 2011-06-09 14:34:17
Built R 2.13.0; i486-pc-linux-gnu; 2011-06-11 13:15:11 UTC; unix


lattice

Package lattice
Version 0.19-30
Date 2011/06/30
Priority recommended
Title Lattice Graphics
Author Deepayan Sarkar <deepayan.sarkar_at_r-project.org>
Maintainer Deepayan Sarkar <deepayan.sarkar_at_r-project.org>
Description Lattice is a powerful and elegant high-level data visualization system, with an emphasis on multivariate data, that is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.
Depends R (>= 2.11.0)
Suggests grid, KernSmooth, MASS
Imports grid, grDevices, graphics, stats, utils, methods
Enhances chron
LazyLoad yes
LazyData yes
License GPL (>= 2)
URL http://r-forge.r-project.org/projects/lattice/
Packaged 2011-06-30 10:16:30 UTC; deepayan
Repository CRAN
Date/Publication 2011-06-30 17:01:14
Built R 2.13.0; i486-pc-linux-gnu; 2011-07-08 19:16:52 UTC; unix


MASS

Package MASS
Priority recommended
Version 7.3-13
Date 2011-04-09
Revision $Rev: 2963 $
Depends R (>= 2.13.0), grDevices, graphics, stats, utils
Suggests lattice, nlme, nnet, survival
Author S original by Venables & Ripley. R port by Brian Ripley, following partial ports by Kurt Hornik and Albrecht Gebhardt around 1998.
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Description Functions and datasets to support Venables and Ripley, 'Modern Applied Statistics with S' (4th edition, 2002).
Title Support Functions and Datasets for Venables and Ripley's MASS
License GPL-2 | GPL-3
URL http://www.stats.ox.ac.uk/pub/MASS4/
LazyLoad yes
LazyData yes
Packaged 2011-04-13 06:15:22 UTC; ripley
Repository CRAN
Date/Publication 2011-04-13 14:51:02
Built R 2.13.0; i486-pc-linux-gnu; 2011-05-30 20:51:08 UTC; unix


Matrix

Package Matrix
Version 0.999375-50
Date 2011-04-08
Priority recommended
Title Sparse and Dense Matrix Classes and Methods
Author Douglas Bates <bates_at_stat.wisc.edu> and Martin Maechler <maechler_at_stat.math.ethz.ch>
Maintainer Doug and Martin <Matrix-authors_at_R-project.org>
Description Classes and methods for dense and sparse matrices and operations on them using Lapack and SuiteSparse.
Depends R (>= 2.10.0), stats, methods, utils, lattice
Imports graphics, grid
Enhances MatrixModels, graph, SparseM, sfsmisc
Encoding UTF-8
LazyLoad yes
LazyData no
LazyDataNote no longer available, since we use data/*.R *and* our classes
License GPL (>= 2)
LicenseDetails The Matrix package includes libraries AMD, CHOLMOD, COLAMD, CSparse and SPQR from the SuiteSparse collection of Tim Davis. All sections of that code are covered by the GPL or LGPL licenses. See the directory doc/UFsparse for details.
URL http://Matrix.R-forge.R-project.org/
Packaged 2011-04-08 15:48:55 UTC; maechler
Repository CRAN
Date/Publication 2011-04-09 07:48:02
Built R 2.13.0; i486-pc-linux-gnu; 2011-04-10 01:23:19 UTC; unix


methods

Package methods
Version 2.13.1
Priority base
Imports utils
Title Formal Methods and Classes
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Formally defined methods and classes for R objects, plus other programming tools, as described in the reference
References John M. Chambers (2008) ``Software for Data Analysis: Programming with R''; Springer NY.
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:36:03 UTC; unix


mgcv

Package mgcv
Version 1.7-6
Author Simon Wood <simon.wood_at_r-project.org>
Maintainer Simon Wood <simon.wood_at_r-project.org>
Title GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description Routines for GAMs and other generalized ridge regression with multiple smoothing parameter selection by GCV, REML or UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
Priority recommended
Depends R (>= 2.3.0)
Imports graphics, stats, nlme, Matrix
Suggests nlme (>= 3.1-64), splines, Matrix
LazyLoad yes
License GPL (>= 2)
Packaged 2011-04-14 11:16:32 UTC; simon
Repository CRAN
Date/Publication 2011-04-14 17:01:29
Built R 2.13.0; i486-pc-linux-gnu; 2011-04-15 13:03:47 UTC; unix


nlme

Package nlme
Version 3.1-101
Date 2011-04-06
Priority recommended
Title Linear and Nonlinear Mixed Effects Models
Author Jose Pinheiro (S version), Douglas Bates (up to 2007), Saikat DebRoy (up to 2002), Deepayan Sarkar (up to 2005), the R Core team.
Maintainer R-core <R-core_at_R-project.org>
Description Fit and compare Gaussian linear and nonlinear mixed-effects models.
Depends graphics, stats, R (>= 2.13)
Imports lattice
Suggests Hmisc
LazyLoad yes
LazyData yes
License GPL (>= 2)
BugReports http://bugs.r-project.org
Packaged 2011-05-06 06:58:40 UTC; ripley
Repository CRAN
Date/Publication 2011-05-06 15:50:04
Built R 2.13.0; i486-pc-linux-gnu; 2011-05-07 11:09:06 UTC; unix


nnet

Package nnet
Priority recommended
Version 7.3-1
Date 2009-05-09
Depends R (>= 2.5.0), stats, utils
Suggests MASS
Author Brian Ripley <ripley_at_stats.ox.ac.uk>.
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Description Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.
Title Feed-forward Neural Networks and Multinomial Log-Linear Models
License GPL-2 | GPL-3
URL http://www.stats.ox.ac.uk/pub/MASS4/
LazyLoad yes
Packaged 2009-07-31 14:02:09 UTC; ripley
Built R 2.12.0; i486-pc-linux-gnu; 2010-11-22 02:20:47 UTC; unix


rpart

Package rpart
Priority recommended
Version 3.1-50
Date 2011-04-09
DateNote March 2002 version of rpart
Author Terry M Therneau and Beth Atkinson <atkinson_at_mayo.edu>. R port by Brian Ripley.
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Description Recursive partitioning and regression trees
Title Recursive Partitioning
Depends R (>= 2.13.0), graphics, stats, grDevices
Suggests survival
License GPL-2 | GPL-3
LazyLoad yes
LazyData yes
URL http://mayoresearch.mayo.edu/mayo/research/biostat/splusfunctions.cfm
Packaged 2011-04-10 16:16:03 UTC; ripley
Repository CRAN
Date/Publication 2011-04-13 14:51:28
Built R 2.13.0; i486-pc-linux-gnu; 2011-04-14 12:07:24 UTC; unix


spatial

Package spatial
Priority recommended
Version 7.3-2
Date 2010-03-28
Depends R (>= 2.5.0), graphics, stats, utils
Suggests MASS
Author Brian Ripley <ripley_at_stats.ox.ac.uk>
Maintainer Brian Ripley <ripley_at_stats.ox.ac.uk>
Description Functions for kriging and point pattern analysis.
Title Functions for Kriging and Point Pattern Analysis
LazyLoad yes
License GPL-2 | GPL-3
URL http://www.stats.ox.ac.uk/pub/MASS4/
Packaged 2010-03-28 16:15:50 UTC; ripley
Repository CRAN
Date/Publication 2010-04-02 17:18:11
Built R 2.12.0; i486-pc-linux-gnu; 2010-12-07 03:14:52 UTC; unix


splines

Package splines
Version 2.13.1
Priority base
Imports graphics, stats
Title Regression Spline Functions and Classes
Author Douglas M. Bates <bates_at_stat.wisc.edu> and William N. Venables <Bill.Venables_at_csiro.au>
Maintainer R Core Team <R-core_at_r-project.org>
Description Regression spline functions and classes
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:36:04 UTC; unix


stats

Package stats
Version 2.13.1
Priority base
Title The R Stats Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R statistical functions
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:35:57 UTC; unix


stats4

Package stats4
Title Statistical Functions using S4 Classes
Version 2.13.1
Priority base
Author R Development Core Team and contributors worldwide
Description Statistical Functions using S4 classes
Maintainer R Core Team <R-core_at_r-project.org>
Depends methods, graphics, stats
LazyLoad yes
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:36:05 UTC; unix


survival

Title Survival analysis, including penalised likelihood.
Maintainer Terry Therneau <therneau.terry_at_mayo.edu>
Priority recommended
Package survival
Version 2.36-9
Date 2011-02-01
Depends stats, utils, graphics, splines, R (>= 2.13.0)
LazyData Yes
LazyLoad Yes
Author Terry Therneau, original Splus->R port by Thomas Lumley
Description survival analysis: descriptive statistics, two-sample tests, parametric accelerated failure models, Cox model. Delayed entry (truncation) allowed for all models; interval censoring for parametric models. Case-cohort designs.
License GPL (>= 2)
URL http://r-forge.r-project.org
Packaged 2011-04-28 17:36:52 UTC; therneau
Repository CRAN
Date/Publication 2011-04-28 19:03:12
Built R 2.13.0; i486-pc-linux-gnu; 2011-05-02 15:44:25 UTC; unix


tcltk

Package tcltk
Version 2.13.1
Priority base
Title Tcl/Tk Interface
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Interface and language bindings to Tcl/Tk GUI elements
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:36:05 UTC; unix


tools

Package tools
Version 2.13.1
Priority base
Title Tools for Package Development
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Tools for package development, administration and documentation
License Part of R 2.13.1
Built R 2.13.1; i486-pc-linux-gnu; 2011-07-09 11:35:53 UTC; unix


utils

Package utils
Version 2.13.1
Priority base
Title The R Utils Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R utility functions
License Part of R 2.13.1
Built R 2.13.1; ; 2011-07-09 11:35:54 UTC; unix


License

Copyright 2005  The Apache Software Foundation

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

  http://www.apache.org/licenses/LICENSE-2.0"

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

People

Thanks to the following people for their contributions, giving advice, noticing when things were broken and such. If I've forgotten to mention you, please email me.

	Gregoire Thomas
	Jan de Leeuw
	Keven E. Thorpe
	Jeremy Stephens
	Aleksander Wawer
	David Konerding
	Robert Kofler
	Jeroen Ooms